Create a Venn diagram for 5 VCF Files (each VCF file is a population)
Hi All Dear,
I have 5 VCF files, each of this files is for a population. So, I want to create a Venn Diagram based on SNPs.
I have been able to find this script by searching.
vcf-compare sample1.flt.vcf.gz sample2.flt.vcf.gz > venn.out
So, How do I edit this script for my case?
Best Regard
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"chrom, pos, alt, ref"columns (bcftools), read into R (or Python). Paste those columns together, then use one of the many ready packages for Venn diagrams.