running problem Albacore

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5.4 years ago

melinaruggiero • 0

Hi all!

I had a problem with the MinION so I obtained ".fast5.tmp" files. After changing the extension to ".fast5" I tried to perform the basecalling with Albacore. The program didn't generate any output file. Could someone help with this? is there an error in my command line?

Thanks!

software error next-gen albacore nanopore • 1.5k views

ADD COMMENT • link updated 5.4 years ago by Ram 43k • written 5.4 years ago by melinaruggiero • 0

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Is there a workspace folder or similar? Can you take a look at the pipeline.log? Is there a sequencing_summary.txt?

ADD REPLY • link 5.4 years ago by WouterDeCoster 47k

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No file was created into the output folder

ADD REPLY • link 5.4 years ago by melinaruggiero • 0

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Strange. Did you get an error message? If not, please search for a pipeline.log file (using find).

ADD REPLY • link 5.4 years ago by WouterDeCoster 47k

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Please use appropriate tags, as such experts can easily find your question. In this case albacore and nanopore would be very relevant.

ADD REPLY • link 5.4 years ago by WouterDeCoster 47k

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Please do not paste screenshots of text. Copy paste the text here with the code formatting option (shown in the image below) or use a GitHub gist.

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ADD REPLY • link 5.4 years ago by Ram 43k

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