Is it common for ATAC-peaks to be located in Repeat Masker annotated regions?

I have ATAC-reads that map to make peaks in repeatMasker + repeat modeller annotated regions? Is this common? Is this an artefact of mapping or perhaps regulatory elements that are transposon derived?

genome atac-seq

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written 7.8 years ago by a.rex

Like 10 reads or 1e+08, and what is the total read count and total peak number and peaks in these problematic regions ? You are lacking details.

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written 7.8 years ago by ATpoint

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