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Ensembl Data Slicer

Ensembl Data Slicer Ensembl (the URL above) provides a feature where one can create a vcf with sample populations (i.e. YRI) from 1000 genomes. It appears to be restricted to a region within a single chromosome.

Any idea of how to retrieve more than a single chromosome and include all regions?

Thank you.

ensembl data slicer 1000 genomes populations

1 answer

You need to use VCF tools and tabix. More info in this FAQ.

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