Beagle 4.1 - phasing and IBD using multiple chromosomes
Hi, BioStars users,
I am trying to use Beagle 4.1 for phasing and IBD analysis on a non-model organism. I am trying to understand how to do it for multiple chromosomes. Should I perform a different iteration for each chromosome, or combine the data in one vcf + one map file?
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mstagliamonte •
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I did similar tasks one chromosome at a time based on the assumption that genetic materials on different chromosomes are completely independent with each, i. e. no linkage.