Haplotype reconstruction using PredictHaplo
I have a simulated population of 1000 sequences of length 500 in FASTA format. I obtained simulated Illumina reads of read length 150 along with the aligned SAM files using ARA. The next step was to use these SAM files to reconstruct the haplotypes present in these reads, but upon specifying these as input to PredictHaplo the program keeps on running without generating any output or giving any error message
Has anyone ever faced a similar problem before?
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