This is a test version of Biostars. For the public version, visit https://www.biostars.org.
Weird error in R

Hi,

Sorry, whatever I am trying R in installing some package, I am getting this error

Any suggestion please?

> source("https://bioconductor.org/biocLite.R")
Error in file(filename, "r", encoding = encoding) : 
  cannot open the connection
In addition: Warning message:
In file(filename, "r", encoding = encoding) :
  InternetOpenUrl failed: 'The operation timed out'
>
r software error
• 153 views • link
written by Za Za

is there no problem with your internet connection?

• 1 views • link
written by Martombo Martombo

Thanks a lot

No, I don't think

• 1 views • link
written by Za Za

Try to use http instead of https

• 1 views • link
written by Fabio Marroni Fabio Marroni

Are you able to open this page in your browser https://bioconductor.org/biocLite.R ? If yes, then just copy and paste it to R console, then install the bioconductor packages as usual, e.g.: biocLite("GenomicRanges")

• 1 views • link
written by zx8754 zx8754

Hello Za!

We believe that this post does not fit the main topic of this site.

More suitable for https://support.bioconductor.org/ or https://stackoverflow.com/

For this reason we have closed your question. This allows us to keep the site focused on the topics that the community can help with.

If you disagree please tell us why in a reply below, we'll be happy to talk about it.

Cheers!

• 1 views • link
written by zx8754 zx8754

0 answers

No answers yet.

Log in to answer this question.

More posts like this
  • scRNAseq error source a custom function
    written by camillab. • camillab.
    Hi, Apologies if it is a stupid error/common knowledge! I am trying to integrate two scRNAseq datasets and I am following [this tutorial][1] and I …
  • EQTL MATRIX _EQTL
    written by Nai • Nai
    ```r setwd("C:/Users/genetics/Desktop/Plant_39/eqtl/") getwd() [1] "C:/Users/genetics/Desktop/Plant_39/eqtl" library(MatrixEQTL) base.dir = find.package("MatrixEQTL") useModel = modelLINEAR SNP_file_name = paste(base.dir, "SNP.txt", sep="") expression_file_name = paste(base.dir, "GE.txt", sep="") covariates_file_name = character() …
  • how to fix error in getGEO function in rstudio?
    written by mahal1366 • mahal1366
    I am new in R. I am using 3.6.1 version of R on 64-bit system with Windows 7. In RStudio, when I attempt to run …
  • Bioconductor not re-installing
    written by theaspirant • theaspirant
    Hello everyone, I am new to this area, I installed R some days back and then Bioconductor package, at the time of installing many other …
  • Query For biocLite
    written by viswanathrana29 • viswanathrana29
    Hi all I heave insatlled then i install Bioconductor Packages through this command ## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R") biocLite() in …
  • R program (bioconductor)
    written by bioinfo bioinfo
    Hi While I was connecting the bioconductor packages I got an error ``` source ("http://www.bioconductor.org/biocLite.R") Error in file(filename, "r", encoding = encoding) : cannot open …
  • error using biocLite: not found
    written by lien lien
    Dear all, I've just got a new computer, and would like to install R and several of the packages withing R, with the ultimate goal …
  • Error in systemPipeR
    written by Parham Parham
    Hi, I am trying `systemPipeR` manual. In the very beginning I get following error. I don't know what to do. Any help is appreciated. Thanks! …
  • How To Solve The Read.Maimages Error In Limma Package Of R ?
    written by Arpitha Hebbar Arpitha Hebbar
    <p>i'm working on agilent data. for the analysis i am using R and bioconductor package limma. in read.maimages <strong><em>RG &lt;-read.maimages(targets$FileName,source="agilent")</em></strong> m getting the following error …
  • Problem In Connecting Cran R Site
    written by Nitin Nitin
    <p>Hello,</p> <p>I m trying to install R packages via CRAN mirror sites..But i am getting Following error</p> <pre><code>Type 'demo()' for some demos, 'help()' for on-line …