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Downloading PROMALS3D in local server

Hi, I am trying to download the following software in our server. http://prodata.swmed.edu/promals3d/promals3d.php The software requires Dalilite and Fast to be installed locally. http://prodata.swmed.edu/promals3d/info/readme.html The link they provided is obsolete ( I tried to open with 2 different browsers: safari and google chrome, but can't connect with server). Even wget command also didn't work for that.

Any suggestions to solve the issue?

promals3d
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updated by enhancerfg • enhancerfg • written by saadleeshehreen saadleeshehreen

1 answer

Try with this link:

http://ekhidna2.biocenter.helsinki.fi/dali/README.html

In point 3 "configure" that say: Edit the paths of $MPIDALI_BIN and $MPIRUN_EXE at the top of /home/you/DaliLite.v4/bin/mpidali.pm

You must to open the archive "mpidali.pm" in the bin directory (follow your own path) with gedit that allow do certain changes in $MPIDALI_BIN and $MPIRUN_EXE.

You must to be sure that $MPIDALI_BIN have your right path (specially in "you"): my $MPIDALI_BIN="/home/you/DaliLite.v4/bin";

And chain $MPIRUN_EXE, the right line is like: my $MPIRUN_EXE="/usr/bin/mpirun -output-filename x "; If you dont have "mprium" in this line , you need to install that package, and delete all that apear after you/ TO -output, and replace this space with "mpirun" to obtain finally: my $MPIRUN_EXE="/usr/bin/mpirun -output-filename x

Dalilite need that mpirum be installed.

After that, go to the DaliLite.v4 directory and run the test:

cd /home/you/DaliLite.v4 ./test.csh

Regards.

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written by enhancerfg • enhancerfg

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