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ABySS denovo assembly installation

Hi Dr, Vandervalk,

I like to do my denovo assembly with your AByss tool, I have installed it, but I think there is a problem in configuration as I didn't see the PATH, so may be that is the reason I couldn't execute.

I got google sparsehash as directed to have the root privilege:

wget http://google-sparsehash.googlecode.com/files/sparsehash-1.11.tar.gz

and I unpacked. Then in sparsehash-1.11 dir I downloaded AByss:

wget http://www.bcgsc.ca/downloads/abyss/abyss-1.9.0.tar.gz

Although it was connected but as didn't get response, I just downloaded ABySS in my directory:

tar -zxf/home/mydir/abyss-1.9.0.tar.gz

and I unpacked, when I see abyss-1.9.0 in the dir

Next, I compiled by going to abyss-1.9.0 dir:

./configure && make
./configure CPPFLAGS=-I/usr/local/include
abyss assembly
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updated by Ram Ram • written by assembly.bfx1 • assembly.bfx1

Hello assembly.bfx1!

Questions similar to yours can already be found at:

We have closed your question to allow us to keep similar content in the same thread.

If you disagree with this please tell us why in a reply below. We'll be happy to talk about it.

Cheers!

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written by Ram Ram

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