How to do a genome wide SNP distribution
We have done this with our sequence
- Aligned our reads with a reference genome
- identified total number of variants (SNP, indels) using bowtie and SAM tools
Is there any possible way to distribute SNPs chromosome-wise?
We didn't assemble our genome yet
Thank You
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Shawrob400 •
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What does that mean?
Do you mean how to count variants par sample per chromosome in a vcf file?