D. melanogaster transposable elements in Ensembl/Flybase annotations
Does anybody know if expressed transposable elements are included in the Ensembl/Flybase D. melanogaster gene annotations?
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Based on a previous response from @Emily_Ensembl Ensembl imports fly annotations in from FlyBase. You can check on FlyBase to see if they are included.
I have contacted FlyBase regarding this and indeed the expressed TEs are not part of the gene annotation.