Biostar Beta. Not for public use.
scRNA-seq, filter low expressed genes based on RPKM value
Entering edit mode
15 months ago
chipolino • 40

Hi everyone!

I analyze scRNA-seq data set from GEO, and it already comes in RPKM values for each gene in each cell. My aim is to do co-expression analysis with GENIE3, and then do differential expression analysis. So my question is how do you filter low-expressed genes by RPKM values and how do you take number of cells (in which gene is expressed) into account?

Thank you!


Login before adding your answer.

Similar Posts
Loading Similar Posts
Powered by the version 2.3