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Question: Single Kallisto abundance
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Dear all, I would like to import my Kallisto abundances into deseq2 pipeline using tximport. Since I do have more than 100 samples for my experiment, I am wondering if I should somehow convert all of my abundances into one single file or is there another step that I should take for preparing all of my abundances for deseq2.

Thanks a lot.

ADD COMMENTlink 17 months ago Duckula • 20
2
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The manual contains a section about how to import multiple files at once.

ADD COMMENTlink 17 months ago ATpoint 17k

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