data download for strandalone blast

how to download protein data of bacteria for strand alone blast from ncbi ftp site

gene

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updated 7.9 years ago by finswimmer

• written 7.9 years ago by ps1470672 •

And what is your question?

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written 7.9 years ago by finswimmer

The easiest way to do this would be to download protein sequences in FASTA format for the current release and then format them into BLAST databases using makeblastdb.

FASTA files can be downloaded using the following command:

wget ftp://ftp.ncbi.nlm.nih.gov/refseq/release/bacteria/bacteria.nonredundant_protein.*.protein.faa.gz

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written 7.9 years ago by Sej Modha

Since there is no strandalone blast you probably meant to say standalone blast. Please edit the title/post to correct that.

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written 7.9 years ago by GenoMax

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