How to Parse a Merged VCF File into Gene-by-Gene data Across Samples?
I have a 6 sample merged VCF file and I am trying to run a gene-by-gene association tool on the data. To do this I am looking for suggestions on how I might separate the VCF into gene by gene data? I would struggle to write my own python script to run this so would preferably like tool recommendations if possible!!
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nighralf •
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What does gene by gene mean in this context? Can you provide an example of the output you want?