Question

what scale does multiBigwigSummary use for score

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5.7 years ago

Lila M ★ 1.2k

Hi, does anyone know if the results for multiBigwigSummary (--outRawCounts scores) are in log? Thanks!

multiBigwigSummary deepTools score • 1.4k views

ADD COMMENT • link updated 5.7 years ago by Devon Ryan 104k • written 5.7 years ago by Lila M ★ 1.2k

score 2 · Accepted Answer · 2018-08-22

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5.7 years ago

Devon Ryan 104k

They're in whatever scale the bigWigs are in. So if your bigWig files have scores on a log2 scale then so is the file produced by --outRawCounts.

ADD COMMENT • link 5.7 years ago by Devon Ryan 104k

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Yes, it was my first thought, but just to be sure. Thank you very much!

ADD REPLY • link 5.7 years ago by Lila M ★ 1.2k