Taxonomic ids of all pathongenic/BSL<1 microbes.
I'm trying to identify any human pathogens in a whole genome metagenome survey of enviromental samples. Is there some list or database of pathogenic microbes? Or list of organisms greater than BSL 1? I have NCBI taxonomy ids from KRAKEN.
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bio.erikson •
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If you have taxonomy identifiers for these viruses then it would be possible to download whole genome sequences using NCBI Eutils. For example: