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GSEA analysis and pathway mapping

Hi,

I have a set of DE genes from a GSEA. I would like to know how to map the genes to pathways in R? This is from Limma's pipeline output. I also have a set of normalized gene counts. How do I make sense of this table to map genes to specific pathways?

pathway r rna-seq
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updated by liux.bio liux.bio • written by ps1212 • ps1212

What do you mean by "map genes to specific pathways"?

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written by h.mon h.mon

Im trying to figure out which genes are part of a certain KEGG pathway.

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written by ps1212 • ps1212

1 answer

You can use EnrichMiner. It performs GSEA analysis and highlights genes on KEGG pathway map according to expression values.

enter image description here

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written by liux.bio liux.bio

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