please do a google search for these kind of things in the future. Googling RNA-SeQC_v1.1.8.jar gives multiple hits. The first one being the link to this post here, and the second one a link to a Github page where the download link is provided. Please keep that in mind.
Hello everyone, I want to know where to download the reference file -"reference.1000G.maf.0.005.txt", I see many scripts mention this file, but I can not find …
I was wondering if anyone could help me with this. I need to run the picard command CollectRnaSeqMetrics below java -jar picard.jar CollectRnaSeqMetrics \ I=input.bam …
I performed Indexing and alignment RNA seq with ref genome everything worked fine. then convert cooordinate (convert coordinates basically takes the reads that map onto …
I have this issue: when I try to test `RNA-SeQC` using GATK's multi-threading I'm not seeing the entire `gatkFlags` string being read: java -jar $HOME/ngs/software/RNA-SeQC_v1.1.8.jar …
Hi all! I was trying to run a command from the example that was given on this webpage: http://www.broadinstitute.org/cancer/cga/rnaseqc_download They give example RNA-seq data to …
Hi @KG
Changing post type from 'Tool' to 'Question'
Hi KG,
please do a google search for these kind of things in the future. Googling
RNA-SeQC_v1.1.8.jargives multiple hits. The first one being the link to this post here, and the second one a link to a Github page where the download link is provided. Please keep that in mind.