Hello, I'm annotating a vcf file using ensembl vep and gnomad v4 vcf file: vep --cache --offline --species homo_sapiens --assembly GRCh38 \ --input_file input.vcf \ …

Good morning guys, I am working on a genomics project, and I want to use the variant allelic frequency (VAF) from population to filter out …

Hello everyone! I used a pipeline named Sarek to run my WES data. The pipeline used two programs to annotate VEP and SnpEff and give …

Hello all, I use vep to annotate my vcf. I would like to know if there is a way, if a variants as a high …

Hello all, I have a list of sequences and for every sequence there is a corresponding table that contains position-specific variants. To give you an …

I have a file with description of transcript with organism: XP 020275132.1 nodal modulator 3 [Asparagus officinalis] XP 008781144.1 nodal modulator 1 [Phoenix dactylifera] I …

hi please, I am trying out kmergenie to determine optimal kmer values for phoenix dactylifera genome assembly. and i get this error any suggestion please …

hello everebody please I am trying to assemble my reads using an algorithms for de novo assembly( De Bruijn Graph) and I don t know …

hello community, please when I try to visualize the mapping results in IGV i get this error,please any suggestion ​ File: /home/vshare/mapping/reads_aligned.sorted.bam does not contain …

Hello everyone, I am beginner for linkage analysis and I have exome sequence data. So I want to ask: 1. Which program should I use …