Is there are any Python library for read bigWig file on Windows?
I want to use python read the bigWig on Windows system, but I can not find any library can do this job, both pyBigWig and bx-python are not support the Windows system.
Is there are any method let me use python read the bigWig file on Windows system? Or, may be I should try to compile a pyBigWig library for Windows?
• 3,279 views
•
link
written
by
flipflappers •
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
Problems in HiC pro installation/Finding libraries in Python
written by ra2967 •
-
How to tell if a BigWig file is 1-based or 0-based?
written by i.sudbery
-
DIAMOND: Does DIAMOND support openmp?
written by lucia10 •
-
Installing samtools from sourceforge
written by c.clarido
-
deeptools installation on MacBook
written by BioDH •
-
fail to compile stampy
written by shlomit.afgin •
-
Running Galaxy tools locally using bx-python
written by Thomas
-
How To Find Clusters Of Small Rna With Interval-Trees, Bx-Python
written by Click downvote
-
How To Read A Bigwig File Using Python
written by Fidel
-
Help With Maf'S In Bx-Python
written by Noah •
When you say on windows, are you using the linux subshell or do you mean python on windows natively?
Sorry, I didn’t express it clearly. I mean python on windows natively.
You might be able to compile pyBigWig or bx-python on Windows 10, that's about the best you can hope for. In general we don't write for or test software on Windows. In fact, if you can use the Linux subsystem on Windows 10 then I expect most programs will then be available to you and work.
If you are happy to switch to
R, or if it is possible to callRfromPython, maybe worth checking rtracklayer package.