How to convert txt or csv files into ped files?
I have the information "FID, IID, PID, MID, Sex, Pheno, Genotype1 allele A ...." with csv file.
I would like to convert this file into ped file for analyzing in plink software.
However, I could not find how to conduct this work.
Please let me know how to deal with this problem.
With R, python, or others... anything is fine.
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sjunlee89 •
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What have you tried? From what you're saying, it looks like you can extract pedigree information from the file you have and use it to create a
ped,bimandfamfile using vcftools/plink.Thank you for your replay. I'm sorry that it was too late... but it had been solved.
Please add the solution as an answer so the question can be marked as solved.
You will need to convert that txt/cvs file into ped and map, formats as described in below links:
Thank your for your comment. I'm sorry that it was too late... Fortunately, it had been solved.