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How to get a report like stuff of a bam file how many percent of the exons are coverred?

Dear Collegues,

Lets say I have a miseq run and have the .bam file from the squencer and I would like to know how many percent of the exons (specific genes) are coverred in these .bam files?

Is it possible?

Thanks in advance

bam exon ngs miseq
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updated by WouterDeCoster WouterDeCoster • written by Clark_BioMorgan • Clark_BioMorgan

1 answer

You can use Picard HsMetrics for that.

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written by WouterDeCoster WouterDeCoster

Or you might consider to use the search function because this question has been asked like a hundred times before ;-)

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written by ATpoint ATpoint

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