Hi everyone,

I used TFBStools and I retrieved the sequence and frequence matrix for a TF.

for example:

library(JASPAR2014)
library(TFBSTools)

opts <- list()
opts[["species"]] <- 9606
opts[["name"]] <- "RUNX1"
opts[["type"]] <- "SELEX"
opts[["all_versions"]] <- TRUE
PFMatrixList <- getMatrixSet(JASPAR2014, opts)
PFMatrixList

I would like to know using this TF matrix if the TF has some binding sites in the promoters of human mitochondrial genes (which promotor, which genes) How I can do?

Thank you very much for your help