Bio.Entrez.efetch return all annotated features
Hi, sorry I am relatively new to Biopython and was wondering if there was a parameter to get all annotated features, instead of just the abbreviated view when using Biopython's Entrez.efetch function?
For example, handle = Entrez.efetch(db='nucleotide', rettype='gb', retmode='text', id='CH482384.1') returns only the abbreviated view.
Is there an appropriate Entrez.readlines() function for when rettype='ft', retmode='text' or rettype='native', retmode='xml'?
Entrez.readlines() raises the errorIncompleteRead: IncompleteRead(0 bytes read)
Thank you!
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
How to access specific gene data from the NCBI Gene database with Biopython
written by João Afonso •
-
Looking for a faster way to get doi of pubmed publications
written by n.anuragsharma •
-
Retrieve title name by accession R vs Python
written by Medhat
-
How do I get full text AND MeSH terms from Entrez on the PMC database in biopython?
written by Syncrossus •
ncbi was broken last time i tried to fetch all the annotations :-( see fetch -complete- genbank file using biopython
It works! Thanks so much. All I had to do was set
rettype='gbwithparts'.