Trinity assembly error on Galaxy

I am having issues with the Trinity assembly. The error says "Remote job server indicated a problem running or monitoring this job." What can I do to solve this issue?

Thank you! Tessa

error trinity

• 1,268 views • link

written 8.1 years ago by tshat003 •

Probably better to post your question here:

https://biostar.usegalaxy.org/

• 1 views • link

written 8.1 years ago by h.mon

0 answers

No answers yet.

More posts like this

Issues with Obitools Installation
written 4.8 years ago by CECILIA •

Hello! I am currently trying to install and use obitools according to this tutorial: https://pythonhosted.org/OBITools/welcome.html#installing-the-obitools. I am having quite a few issues with the installation …
DENOVO ASSEMBLY
written 5.1 years ago by askari.arezou94 •

Hi guys I have a serious problem with my data I want to do the Denovo assembly genome with size genome(AFTER TRIMM):2.6 GIG and coverage …
slurm error
written 5.1 years ago by rheab1230 •

Hello everyone: I submitted a job via slurm and got this error: Error: cannot allocate vector of size 7.8 Gb Execution halted Warning message: system …
Download MuSiC RNAseq analysis program
written 5.2 years ago by - •

I have been trying to download the to MuSiC to analyze RNAseq data. The code I am working is from the tutorial page: # install …
Error: NCBI C++ Exception - Invalid choice selection: NCBI-Seqalign::Score.value.real
written 6.9 years ago by mrmrwinter •

Hi, I am having issues running blast from command line, accessing remote databases. This is what i am running: blastn -db nt -query {input} -out …
Can't locate Bowtie2 index files
written 7.4 years ago by kdc15 •

Hi, I am trying to align my sequences to a reference genome but Bowtie2 is having trouble locating the index files that I downloaded from …
Trinity Chrysalis/Butterfly Out of memory but still running?
written 7.5 years ago by mparker21 •

Hi, I am new to using trinity (and also have very little experience in cs), so I am not too familiar with it, but have …
Trinity assembly resources
written 7.8 years ago by Mostafa Mahmoud •

hi, I have 60 samples 10g of RNA seq I using Trinity to do denovo assembly but i can't figure out resource usage i am …
Trinity don't work during inchworm step
written 9.4 years ago by park.seojeong2 •

Hi. I'm assembling pair-end RNA-seq using Trinity v2.4.0. Other options : --seqType fq --max_memory 30G --samples_file WT_samples.txt --CPU 16 --output WT_Trinity_out --full_cleanup I have some …
Trinity Error with the the flag of --run_as_paired
written 11.1 years ago by seta

I did de novo transcriptome assembly after trimming on about 320 million Illumina paired end reads (strand-specific library, FR) using CLC genomic workbench software. Now, …