How to optimize the homology modeling?
I build a homology model used by Swiss-model, and evaluate the model by SAVEs, but how to further optimizing the model? what tools can I use?
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Ram
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Laura_zz •
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Laura_zz •
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Do energy minimization to refine the model by relaxing the steric clashes. You can use spdbv viewer to do that.
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pbpanigrahi
There are several tools that you could refine your 3D model e.g. TIGRESS, PREFMD that use different methodological approaches to refine the protein structure models.
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Shamim Sarhadi
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