Multiple alignment to matrix generation
I am using Python 3.3+ version and I want to use an multiple sequence aligned file (Clustalw format) to generate a distance-based matrix. Since I'm still on learning stages with python, I want to know how do I use the aligned sequences to generate a matrix (by giving my own values for amino acid frquencies).
• 1,479 views
•
link
written
by
mdsiddra •
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
Generating a consensus sequence of a large number of amino acid sequences in python
written by unicorn2kang •
-
Extract sequence subset from multiple sequence alignment based on position in a specific species.
written by nad7wf •
-
Reconstruction of simplest tree using multiple sequence alignment
written by mdsiddra •
-
File format conversion to clustal using biopython
written by mdsiddra •
-
WAG matrix implementation
written by mdsiddra •
-
Amino Acids of same physiochemical properties
written by mdsiddra •
-
How do I generate a character state matrix?
written by mdsiddra •
-
Creating your own substitution matrix from an alignment
written by mdsiddra •
-
Utility for calculating Fitch score when given a phylogenetic tree and an aligned multi species ami…
written by bhffs01 •
-
Create distance matrix object from input alignment in BioPython
written by jba462 •
Hello mdsiddra!
Questions similar to yours can already be found at:
We have closed your question to allow us to keep similar content in the same thread.
If you disagree with this please tell us why in a reply below. We'll be happy to talk about it.
Cheers!
Though the questions already exist but I don't find the helpful answers, can any guidelines be provided?