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How I can find exones and pathway by shell or ...

I have some coordinates ( like: chr24:40902129-41709809, chr25:11035146-11097889) and genes from Oar_v4.0.gtf (sheep) in this coordinates. How I can find exones and pathway. I need the fastest and newest methods by shell or .... Thanks.

genome
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updated by Biostar Biostar • written by hosin • hosin
  1. For exons, intersect coordinates with gtf file (use bedtools)
  2. For pathways, try online services with genes of interest (for eg kegg, david, biomart)
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written by cpad0112 cpad0112

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