Find genes which are related to SNPs
Hi
Is there any chance to get SNPEff or some files which work like that in NCBI or other dataset? Actually I just want to find genes related to SNPs which are in a map file based on Oar_v4.0 or Oar_v3.1 reference genomes. I need some files like that.
My file is:
Chr Snp Cm Pos
1 rs400427694 0 20509
1 rs415239111 0 21717
2 rs408999184 0 206544601
2 rs417013160 0 206552175
3 rs418489595 0 141890679
4 rs430807116 0 102637344
4 rs429176809 0 102641170
1 answer
Your best bet is to use variation resources from Ensembl: http://www.ensembl.org/Ovis_aries_rambouillet/Info/Index
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