Extract codon information from VCF file
I have VCF file of Bos Taurus. I want to get the codons of SNP as well as know the region i.e if they lie in intronic region or exonic. Can anyone name any good tool or a package in R which can do my job.
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k.rajain1212 •
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Hello,
you could use ensembl's VEP for that as an online tool.
If you prefer local installation have a look at SnpEff.
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