Hi I have lots of snp data like gg=82, ga=34, aa=05 and on the same subjects I have protein expression data as well.
I have data of five snps and don't know how to present it, and analyse it? or logically tell the whether this snp has something to do with protein expression.
just for an example : genotype size mean protein expressed
gg 145 97.959
ag 38 92.142
aa 4 92.76
T wo are intronic and 2 in the promotor region and only one in the exon of the same gene. I have also found for intronic and promotor snps there is no amino acid change but exonic snp has L/L not sure what that mean. All snps are in or around the gene encoding for that protein.
please can some one tell what kind of analysis i should do and also what can be done with this kind of data. thanks