Ensembl: Genes versus Transcripts
Going under the Ensembl one can look up particular genes as well as particular transcripts. In the process of doing so you can view the sequence, such as the sequence here. Now I understand that a particular gene can have many different transcripts (the gene I link in this instance has 8 different transcripts). So what is Ensembl showing when it displays the sequence? The longest transcript? Thank you for any clarification.
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Hello nathaniel,
it is a combined view of all transcripts. You can hover your mouse over the exons and get a tooltip in which transcript this is an exon along with it's number.
fin swimmer
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From Ensembl glossary:
For ensembl genes:
For transcript:
and the building of a coding gene is explained here: http://asia.ensembl.org/info/genome/genebuild/automatic_coding.html