deepTools plot profile problem

Hi everyone!

I hope that someone who familiar with deepTools could help me. I've got into a problem while trying to plot profile using deepTools plotProfile option. I tried to add a title to the graph by the following command: --plotTitle "Damage distribution" but still get the title 'Genes' above it.

This is the obtained pic:

image: plot

These are my commands:

computeMatrix scale-regions \
  -S first.bw second.bw \
  -R exons.bed \
  --regionBodyLength 140 \
  -o matrix.mat.gz
plotProfile \
  -m matrix.mat.gz \
  -out Exons.png \
  --perGroup \
  --startLabel "Start" \
  --endLabel "140b" \
  --colors '#DAA521''#006401' \
  --plotTitle "Damage distribution" \
  --samplesLabel transcribed nonTranscribed

deeptools

• 4,478 views • link

updated 3.4 years ago by Ram

• written 8.2 years ago by elisheva

What happens If you provide this parameter just with SPACE in double quotes for plotProfile,

--regionsLabel " "

• 1 views • link

written 8.2 years ago by EagleEye

1 answer

Your sample label is "genes" because you used --perGroup. Try adding --regionsLabel " "

• 1 views • link

written 8.2 years ago by Devon Ryan

Thanks to you and @EagleEye, it worked!!

• 1 views • link

written 8.2 years ago by elisheva

Hello elisheva,

If an answer was helpful, you should upvote it; if the answer resolved your question, you should mark it as accepted. You can accept more than one if they work.
Upvote|Bookmark|Accept

• 1 views • link

written 8.2 years ago by GenoMax