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download human mRNA

Hello,

I try to predict the targets of human miRNA.

Where can I download the human mRNA data?

Thanks in advance for great help!

Yue

genome
• 2,570 views • link
updated by sacha sacha • written by yueli7 yueli7

You want mRNA FASTA sequence?

• 1 views • link
written by Kevin Blighe Kevin Blighe

Kevin Blighe,

Thank you for your response.

Yes! I want the fasta sequence?

Thanks!

• 1 views • link
written by yueli7 yueli7

In that case, please see the answers that have already been given. Genomax's answer, in particular, will give you the FASTA sequences of all coding and non-coding mRNA.

The answer by sacha appears to give the FASTA sequence of mirs themselves, which are also available in GENCODE.

Please up-vote and accept answers and comments that help.

• 1 views • link
written by Kevin Blighe Kevin Blighe

2 answers

From GENCODE. Look under the fasta sequence category.

• 1 views • link
written by GenoMax GenoMax

http://www.mirbase.org/ftp.shtml

• 1 views • link
written by sacha sacha

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