Finding kmers in genome
how to know if a number is specific to a set of genomes. I have the following kmers:
AGAAGAAGA
AAGAAGAAG
AAAAGAAAA
CAGCAGCAG
I want to see if they are unique in the genome
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genome
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Are you asking the right question? How can you expect such short sequences to be unique in any genomes of reasonable size.
for a nonamer in an unbiased, equally distributed genome, frequency is 4 in a million (0.00000381469). What is the size of genome?