Where can I find sequencing statistics? · Biostar

This is a test version of Biostars. For the public version, visit https://www.biostars.org.

Where can I find sequencing statistics?

I know that back in the days there was an opportunity to easily view how many full genomes where sequenced on NCBI web-site, but now i can't understand whether the numbers that I'm looking at are valid. For example, I want to know how many eukaryotes have their genome sequenced (the number that I see tight now is 16037) is this correct? And if so, can you suggest any other sources where I can see stats like this? Thank you

sequencing statistics

• 678 views • link

updated 6.3 years ago by GenoMax

• written 6.3 years ago by moriakoto1998 •

1 answer

You still can. Take a look at the report file for GenBank genomes available here. If you are only interested in RefSeq genomes then check this file.

You can also find that information in an interactive table on this web page.

• 0 views • link

written 6.3 years ago by GenoMax

Log in to answer this question.

More posts like this

How to download genomes and proteins from JGI in bulk via the command line?
written 2.9 years ago by O.rka

I'm trying to figure out how to download from JGI in bulk. In particular, I'd like to grab the genome and MycoCosm (https://mycocosm.jgi.doe.gov/). I honestly …
JGI bacterial image gallery
written 3.3 years ago by zhousun21 •

Hi all, I am making a phylogenetic tree of some bacteria. I remember that the Joint Genome Institute used to have a nice collection of …
Assembly not in scope for NCBI Datasets
written 4.7 years ago by Valentin •

Hello, I am trying to download the genome with assembly accession number GCA_015351695.1 using the command line NCBI Datasets. When I run **datasets download genome …
News: New NCBI Datasets home and documentation pages provide easier access
written 5.3 years ago by e.cox •

[NCBI Datasets][1], the new set of services for downloading genome assembly and annotation data, has redesigned and reorganized web pages to make it easier to …
NCBI genome stats
written 5.4 years ago by Chirag Parsania

Where can I find taxonomy-wise NCBI genome stats? For example, how many genomes are sequenced in prokaryotes, in fungi, metazoa, etc? Thanks.
News: NCBI Datasets - try it out!
written 6.4 years ago by vkkodali_ncbi

## See full blog post on NCBI Insights: https://ncbiinsights.ncbi.nlm.nih.gov/2020/03/30/ncbi-datasets/ NCBI introduces [Datasets][1], a new resource that lets you easily gather data from across NCBI databases. …
How do I download mm10 major release genomic fasta and gtf file?
written 6.9 years ago by sg197 •

I'm wanting to align some RNA-seq to mm10. I've read that you should align to the major release and not patch releases (https://www.biostars.org/p/342482/). However I …
Different position of the same alternative locus
written 9.6 years ago by ivar.grytten •

Where do people get the position of GRCh38 alternative loci? I've found multiple sources, and they seem to give different positions of some alternative loci. …
dbSNP release dates
written 12.2 years ago by Adam

Does anyone know where I can find a table that gives the dbSNP build numbers alongside their release date? I know dates are available for …
Downloading All The Incomplete Bacterial Genomes
written 12.8 years ago by Eric Normandeau

<p>Following the post at <a href='/p/61081/'>download all the bacterial genomes from ncbi</a>, I was able to download all the completed bacterial genomes easily from here: …