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5.9 years ago
FallingBabyEagle
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0
Hello, I've downloaded some text files from GEO, and I'm hoping to annotate these. Could someone point me in the right direction?
What do you mean by "hoping to annotate these"?
The text files have ensembl gene ID for mouse, and gene counts. I want to know what genes they are, without having to look them up individually. I don't wanna look up 26000 rows.
Can you post a few rows to show what the output looks like?
You can use biomaRt (https://bioconductor.org/packages/release/bioc/html/biomaRt.html ) or BioMart via the web interface to convert those ID's to gene symbols.
@genomax Thank you so much. I'll give that a go. Have a great day, everyday hero.