This is a test version of Biostars. For the public version, visit https://www.biostars.org.
How to annotate GEO data that uses GPL13112 Illumina HiSeq 2000 (Mus musculus) platform?

Hello, I've downloaded some text files from GEO, and I'm hoping to annotate these. Could someone point me in the right direction?

gene count

What do you mean by "hoping to annotate these"?

The text files have ensembl gene ID for mouse, and gene counts. I want to know what genes they are, without having to look them up individually. I don't wanna look up 26000 rows.

Can you post a few rows to show what the output looks like?

ENSMUSG00000000001  4827
ENSMUSG00000000003  0
ENSMUSG00000000028  201
ENSMUSG00000000031  20
ENSMUSG00000000037  125
ENSMUSG00000000049  3
ENSMUSG00000000056  947
ENSMUSG00000000058  1167
ENSMUSG00000000078  2009
ENSMUSG00000000085  1497
ENSMUSG00000000088  2535

@genomax Thank you so much. I'll give that a go. Have a great day, everyday hero.

0 answers

No answers yet.

Log in to answer this question.