Change XLOC to FBtr, FBgn or any other ID that can go through DAVID

I have a list of XLOC gene IDs from a CUFFlink output and I need to change them to any other ID that would help me understand them better. I do not have the original output so I am unable to do anything with that. I would appreciate any help.

galaxy xloc id conversion

• 1,598 views • link

written 8.3 years ago by Sepd •

0 answers

No answers yet.

More posts like this

XLOC gene id
written 2.8 years ago by AK828 •

Hello everyone, I am a little clueless when it comes to bioinformatics, but I need help please with understanding how to convert "XLOC" gene IDs …
david ID conversion
written 4.1 years ago by hana •

Hello, I am trying to use david gene ID conversion tool. I have a list of locus tag and would like to convert them to …
Input of 173 genes into enrichGO but no pathways are shown
written 4.9 years ago by foxiw •

Hi, I'm trying to use the clusterProfiler package to explore which pathways are overrepresented in my list of significantly differentiated genes. I have 173 DE …
How to get geneIDs from XLOCs?
written 5.6 years ago by sarai •

Hi everyone, I need your help with this: After Cuffdiff analysis I got XLOCs identifiers but I want to get also the gene IDs. I …
Visualize GO term relationships with only ID
written 6.1 years ago by grapestory •

Hi Biostars! I am new here so please let me know if I am doing anything incorrectly. My question is: How can I visualize the …
Cuffdiff genes.fpkm_tracking xloc IDs to Ensembl IDs
written 8.4 years ago by bryce.kirby •

Hello, I am faced with a dilemma, I have run and obtained output from Cuffdiff and was looking to input it into GSEA and CummeRbund, …
Need to search my genes in KOG database
written 9.7 years ago by mubangafchama •

Hello Does any one know which tools I can use for functional annotation with specifically the KOG database. My gene IDs are in ensemble and …
Question about the appropriate FPKM gene expression processing
written 11.7 years ago by AlexAbdulkaderKheirallah

Hi there, As part of my RNA-Seq project analysis I wrote a program to organize a gene expression table for subsequent analyses. The reason I …
NCBI protein IDs convert to gene IDs and then gene sequences
written 11.9 years ago by biolab

Hi everyone, I have many NCBI Ref protein IDs (e.g. NP_051085.1), I need to convert them to gene IDs, and then extract gene sequences. I …
Gene_short_name missing in CuffDiff output (or how to retrieve it?)
written 12.0 years ago by nevev

<p>Dear All,</p> <p>I ran Tuxedo at Galaxy, using TopHat2-Cufflinks-Cuffmerge-Cuffdiff. I expected my Cuffdiff output to contain gene_name, so that I could directly identify genes in …