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How to convert original BED file to a GTF ?

Hello everyone,

Now, I use Linux base for analyse HISAT2, Stringtie, ballgown. I have the original BED file and I would like to convert to GTF file for Stringtie analysis. If you have some suggestion about tool Or command for convert it, please let me know.

Thank you for your support Kan

assembly rna-seq alignment
• 6,392 views • link
updated by alejandrogzi • alejandrogzi • written by worarado.kan • worarado.kan

Hi, I try to follow that website for change Bed file to gtf but can not. Do you have another kind suggestion?

Best,

• 1 views • link
written by worarado.kan • worarado.kan

Which software and how was the command yo tried? What were the errors?

• 1 views • link
written by h.mon h.mon

1 answer

Hi, here is one option that produces a complete-featured GTF ready to use in those tools: bed2gtf

• 0 views • link
written by alejandrogzi • alejandrogzi

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