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miRNA Target Prediction (online/offline tools)?
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21 months ago
omer.k • 20

I've acquired a set of NGS data, human RNA. There are suspected SNPs, which I have reason to believe could either hinder miRNA:RNA interaction or create new miRNA:RNA interaction site.

Therefor my plan is to gather sequences from around the SNPs (20bp up/downstream) and input them to a prediction tool which could asses which if any miRNAs could potentially interact with it. Conversely if I input the reference (no newly discovered SNPs), which miRNAs would interact with this site, namely which miRNA potentially lost its effect of the transcript.

What would be a good way of doing this?

RNA miRNA • 347 views
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