Hi, Very simple question. I have acquired a sequence which I think originates from a specific transcript. it is around 10kbp long. I'd like to use this sequence to find possible miRNAs which could potentially target it. What are my options? I'm open for suggestions using online platforms as well as stand-alone scripts (Win/Linux).
So far I've tried searching in many platforms, but seems like none have the option to search for miRNA based on user input sequence.