This is a test version of Biostars. For the public version, visit https://www.biostars.org.
Variant Control Format (VCF) TO Mutation Annotation Format (.MAF)

Is there an application which will accept a vcf as an input file and automatically prepare a .maf (mutation annotation format) for its output? I tried Ensemble's VEP application but could not save it in .maf format. Is the best alternative mskcc/vcf2maf ? Responses are appreciated!

vcf maf

1 answer

Try Oncotator

Log in to answer this question.