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GATK gradlew bundle Error
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12 months ago
Karachi, PK

While building gatk

sudo ./gradlew bundle


Exception in thread "main" EC parameters error at at at at at at at at at at at org.gradle.wrapper.Download.downloadInternal( at at org.gradle.wrapper.Install$ at org.gradle.wrapper.Install$ at org.gradle.wrapper.ExclusiveFileAccessManager.access( at org.gradle.wrapper.Install.createDist( at org.gradle.wrapper.WrapperExecutor.execute( at org.gradle.wrapper.GradleWrapperMain.main( Caused by: EC parameters error at$P11ECPublicKey.getEncodedInternal( at at java.util.ArrayList.indexOf( at java.util.ArrayList.contains( at at at at at at at at at at at at ... 13 more Caused by: EC parameters error at at at$P11ECPublicKey.getEncodedInternal( ... 28 more Caused by: no such provider: SunEC at at at at at

Entering edit mode
13 months ago
WCIP | Glasgow | UK

I surmise this has nothing to do with GATK but with gradle. Googling EC parameters leads to this issue which suggests OpenJDK7 is the culprit. As suggested there, try upgrading to OpenJDK8 in case you are also on 7. This is, of course, a wild guess from me...!

Entering edit mode

Thank you dariober, it works

sudo apt-get update
sudo apt-get install openjdk-8-jdk

sudo update-alternatives --config java
sudo update-alternatives --config javac

and enter the number for which JDK to use of your choice.

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