Entering edit mode
5.9 years ago
2012secondseason
▴
40
Hello.
There are 3 contigs about chromosome 1 in a 1000 genome indels vcf file.(1000G_phase1.indels.hg19.vcf)
contig=<id=chr1,length=249250621,assembly=hg19>
contig=<id=chr1_gl000191_random,length=106433,assembly=hg19>
contig=<id=chr1_gl000192_random,length=547496,assembly=hg19>
I dont understand what 'assembly' exactly means. In fact, I don't fully understand how breakpoint are assembled.
contig, breakpoint, indel, assembly. How they are related?? :( If you explain it with picture I would be so grateful. (Any answer would be helpful.)