Diff gene expression for knock out gene on RNA Seq data

Hi there,

I have got this RNA seq data in .csv format. doe degs. I need to find the knock out gene effect on this data. Can anyone help in a simplified manner?

Awaiting your response.

Ainnie

NC1_length  NC1_expected_count  NC1_FPKM    NC1_Symbol  NC2_length  NC2_expected_count  NC2_FPKM    NC2_Symbol
1336.64 284 35.85   A1BG    1271.94 148 21.84   A1BG
1461.35 211 24.11   ADA 1574    197 22.95   ADA
6288.63 166.04  4.07    AKT3    3859    10  0.45    CDH2

rna-seq r degs knockout gene

• 1,138 views • link

updated 8.3 years ago by Biostar

• written 8.3 years ago by micro32uvas •

Are NC1 and NC2 groups or samples? Do you have biological replicates? How was this file generated (it's incredibly non-standard)?

• 0 views • link

written 8.3 years ago by Devon Ryan

Hello micro32uvas!

We believe that this post does not fit the main topic of this site.

It is unclear what you are asking and you have not responded to Devon's request for clarification.

For this reason we have closed your question. This allows us to keep the site focused on the topics that the community can help with.

If you disagree please tell us why in a reply below, we'll be happy to talk about it.

Cheers!

• 0 views • link

written 8.3 years ago by Michael Dondrup

0 answers

No answers yet.