Identification of Common ROH region between two exomes
Can anyone suggest me the best method to identify common ROH region between two exomes. I have the vcf files for both the samples and I initially used FILTUS but when I cross check FILTUS results manually, I could find heterozygous variants with in the ROH region given by FILTUS. Then I used bcftools but I am not getting proper results. Thanks in advance.
• 1,860 views
•
link
updated
by
Biostar
•
written
by
nkausthu •
•
written
by
nkausthu •
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
bcftools run-roh error
written by 715c719f •
-
Alignment Viewer
written by bandanaschapagain •
-
Interpreting output of BCFtools RoH
written by fasaba •
-
Why bcftools + guess-ploidy is not giving the correct results
written by nkausthu •
-
Identifying Heterozygous Variants in VCF file using vcftools or bcftools
written by oars
-
High score deletion called by XHMM shows full coverage through IGV
written by nkausthu •
-
Annotation of XHMM VCF file (CNV analysis)
written by nkausthu •
-
Variant call format (VCF) file, how to get statistics per sample?
written by Tails
-
VCF to BCF file conversion
written by SOHAIL
-
Reducing sequencing errors in .vcf file
written by lcc1844 •
I haven't used it, but the homwes tool in genomecomb developed by our department can find regions of homozygosity, see also the paper.