perl extract-same-SNP.pl script
Hi
How I can find extract-same-SNP.pl file ( of this script) . Actually this script doesnt work in my shell ( No such file or directory)
and I had many search about that, but I dont have result .
Please help me
My command is: perl extract-same-SNP.pl lrrbaf.txt snphwe.map result.txt
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hosin •
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Where did you find that script. Please post the complete outputs.
Thank you very much for your attention. Actually a student introduced to me this script, but now I dont have access to him.anyway I have a big file about 600K like this (included 6 columns):
also I have map file (included 4 columns):
How I can extract the rows which are numbered of a big file by map like this:
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I believe solutions to this problem were already given in this question: How can I extract the rows which are numbered of a big file?
My system does not respond by these methods. I dont have output file
Please provide detailed feedback in that thread, for example under the answer of Pierre Lindenbaum : A: How can I extract the rows which are numbered of a big file?
This may require an AWK solution.
grepwith -f FILE can take days or weeks with a reasonably large file. Hosein, did you not try thejoincommand given by Pierre in the other question?Yes I did many try, like this: join -t $'\t' -1 1 -2 1 <(sort -t $'\t' -k1,1 440s.txt) <(sort -t $'\t' -k1,1 440.txt)> Output . But output file is empty
Please provide detailed feedback in that thread, for example under the answer of Pierre Lindenbaum : A: How can I extract the rows which are numbered of a big file?
Hello hosein_salehi6!
Questions similar to yours can already be found at:
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