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KEGGREST: how to retrieve compound list by pathway ID

Hello, I am not very familiar with KEPP API and KEGGREST. I want to get the list of compound by pathway ID. In Kegg API, I can get it by : http://rest.kegg.jp/link/cpd/map00362

But by using KEGGREST, I can't get that using KeggLink or any other command. I will be thankful if you help me out.

I am also confused by using KEGG API vs KEGGREST. Is there anyway to use LEGG API ( I mean the direct http link) in R or Python instead of using KEGGREST package?

Any help would be appreciated. Thanks for your time in advance.

keggrest
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updated by AB AB • written by halehashki • halehashki

Perhaps this thread will assist: KEGGREST -- gene list (take a look at the answer of Damian).

Also take a look at my comment in the thread, where I give a quick example in R.

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written by Kevin Blighe Kevin Blighe

1 answer

This should work 

keggGet("pathway_id")[[1]]$COMPOUND

As for using the KEGG API in R, I'm not aware of it. You should be able to pull all the data you need using KEGGREST

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written by AB AB

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