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What is Known_genome_size in the SOAPdenovo output statistic file

Hi, every one,

I am doing Allumina Hiseq short reads de novo assembly using SOAPdenovo2.4. In the output xxx_Graph.scafStatistics file, the Known_genome_size is shown a negative number. What does that mean? I have searched online to no vail. How does SOAP calculate this number? Could anyone help me here? Thanks much!

LT

assembly

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